🔨 Changes anova to kruskal

analyze.py

@@ -7,21 +7,38 @@ import matplotlib.pyplot as plt
 
 parser = argparse.ArgumentParser()
 parser.add_argument("-g", "--graph", action="store_true", default=False, help="Plot graph")
+parser.add_argument("-s", "--save", default="", help="Graph save location")
 args = parser.parse_args()
 graph = args.graph
+save = args.save
 
 
 def analyze(name: str, data: List[np.ndarray]):
-    F, p = stats.f_oneway(*data)
+    #print(f"Checking if normally distributed for {name}")
+    #for i in range(len(data)):
+    #    _, normal_p = stats.shapiro(data[i])
+    #    if normal_p > 0.05:
+    #        print(f"\tGroup {i}: normally distributed")
+    #    else:
+    #        print(f"\tGroup {i}: NOT normally distributed")
+
+    filtered_data = []
+    for index, item in enumerate(data):
+        if len(item) > 5:
+            filtered_data.append(item)
+        else:
+            print(f"Data group at index {index} removed due to insufficient size ({len(item)})")
+
+    F, p = stats.kruskal(*filtered_data)
     print(f"F-stats for {name}: {F}")
     print(f"p-value for {name}: {p}")
 
-    if p > 0.05:
+    if round(p, 4) > 0.05:
         print("statistically insignificant\n")
         return F, p
 
     print("statistically significant")
-    tukey_results = stats.tukey_hsd(*data)
+    tukey_results = stats.tukey_hsd(*filtered_data)
     print(tukey_results)
 
     return F, p
@@ -43,7 +60,7 @@ def plot_violin(data, labels, Fs, ps, title):
             index = j * 2 + k
             step = 1 if index > 0 else 0.5
 
-            axs[j, k].violinplot(data[index], showmeans=True)
+            axs[j, k].violinplot(data[index], showmedians=True)
             axs[j, k].set_title(grade_names[index])
             axs[j, k].set_xlabel(title, fontweight="bold")
             axs[j, k].set_ylabel(grade_name_labels[index], fontweight="bold")
@@ -55,11 +72,14 @@ def plot_violin(data, labels, Fs, ps, title):
             axs[j, k].text(0.01, 0.99, f"F-stat: {F:.2f}\np-val: {p:.4f}", ha="left", va="top", transform=axs[j, k].transAxes,
                            fontweight="bold")
 
-            means = list([a.mean() for a in data[index]])
-            for l in range(len(means)):
-                mean = round(means[l], 2)
-                axs[j, k].text(l + 1.05, mean + 0.05, f"{mean}")
+            medians = list([np.median(a) for a in data[index]])
+            for l in range(len(medians)):
+                median = round(medians[l], 2)
+                axs[j, k].text(l + 1.05, median + 0.05, f"{median}")
 
     fig.tight_layout()
     fig.show()
-    plt.show()
+    if save != "":
+        plt.savefig(save)
+    else:
+        plt.show()